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SilicoCyte™ is capable of automatic image analysis,
requiring least amount of user intervention. SilicoCyte™ provides
automatic, semiautomatic and manual gridding options
to the user. Specific gridding mode used during image
analysis depends on the quality of image imported into
SilicoCyte for this process.
Quality control reports available in the software qualify
the experimental data for next stage of data analysis.
Quality control reports are generated based on the acceptance
parameters set by the users according to their specific
quality parameters of their experiment environment.
High level of automation and quality control reports
add efficiency to the image analysis process.
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Automatic, Semi-automatic
and manual gridding |
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Interface to popular scanner |
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Compatible with variety
of microarray images |
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Normalization |
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LOWESS Normalization |
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Normalization by Mean |
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Normalization by Median |
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Normalization by Trimmed Mean |
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Normalization by Percentile |
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Normalization by Scaling Between 0 and 1 |
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Normalization by Subtracting the Mean |
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Normalization by Subtracting the Median |
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Normalization by Z-score |
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Export intensity data
to MS-Excel, and ASCII text files |
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Quality control reports |
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User-configurable values
for rejection thresholds of elements |
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Facility to invalidate
bad elements/spots during image analysis |
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